Basic Information
Locus ID:
populus_peu07899
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 16700153 | 16703288 | + | populus_peu07899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 29,552.74 Da | 45.36 | 57.52 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 139 | 182 | 1.4E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 5 | 85 | 1.2E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 187 | 245 | 3.1E-26 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 3 | 74 | 1.83E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 76 | 133 | 3.66E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 189 | 3.83E-10 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 214 | 249 | 8.1E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 213 | 1.3E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 140 | 182 | 2.8E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 75 | 139 | 32.618015 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 73 | 25.298092 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 183 | 11.294285 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011013258.1 | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X2 [Populus euphratica] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5Q357 | Zinc finger family protein OS=Populus alba OX=43335 GN=D5086_0000146060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology