Basic Information
Locus ID:
populus_peu07893
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 16414956 | 16418284 | - | populus_peu07893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 36,896.39 Da | 44.59 | 63.11 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 200 | 243 | 9.7E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 66 | 146 | 1.9E-20 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 59 | 135 | 3.66E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 137 | 194 | 5.36E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 200 | 250 | 2.99E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 278 | 1.0E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 201 | 243 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 136 | 200 | 32.618015 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 201 | 244 | 11.323791 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 59 | 134 | 23.501377 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011013258.1 | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X2 [Populus euphratica] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Z7J6 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_030609 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology