Basic Information
Locus ID:
populus_peu07870
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 15627352 | 15632797 | + | populus_peu07870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 43,615.85 Da | 65.68 | 69.51 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 331 | 371 | 4.86036E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 331 | 376 | 3.2E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 331 | 377 | 9.59E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 380 | 3.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 332 | 370 | 0.0011 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 332 | 371 | 11.338544 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011004247.1 | PREDICTED: probable E3 ubiquitin-protein ligase LUL4 [Populus euphratica] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8CJ49 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_032329 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology