Basic Information
Locus ID:
populus_peu07650
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 12511867 | 12519120 | - | populus_peu07650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 159,546.44 Da | 38.40 | 109.64 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 868 | 1158 | 8.61049E-83 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 564 | 768 | 5.86579E-95 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1181 | 1401 | 9.2786E-122 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 252 | 539 | 3.08496E-95 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 590 | 721 | 7.6E-16 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 872 | 1109 | 4.1E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 250 | 518 | 1.3E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1200 | 1348 | 2.5E-32 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1175 | 1409 | 1.58E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 868 | 1163 | 1.83E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 590 | 782 | 1.16E-46 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 245 | 544 | 1.83E-34 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 832 | 1164 | 2.3E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 580 | 809 | 3.3E-61 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 229 | 550 | 7.0E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1166 | 1419 | 1.9E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1209 | 1401 | 6.1E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 595 | 777 | 1.5E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1185 | 1417 | 18.707611 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 571 | 792 | 19.047745 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 251 | 531 | 34.204285 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 870 | 1146 | 34.388721 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 694 | 708 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 830 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 841 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_011029644.1 | PREDICTED: putative ABC transporter C family member 15 isoform X2 [Populus euphratica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1ZJ62 | ABC-type xenobiotic transporter OS=Populus trichocarpa OX=3694 GN=POPTR_008G179500 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology