halophFGD

Basic Information

Locus ID: populus_peu07647

Species & Taxonomic ID: Populus euphratica & 75702

Genome Assembly: GWHAAYU00000000

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	12501431	12502867	-	populus_peu07647

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.50	35,432.16 Da	52.95	72.11	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	254	301	4.8E-10	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	231	318	4.0E-17	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	118	230	1.4E-7	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	256	281	7.5E-7	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	253	283	9.448698	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G04130.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_011016294.1	PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Populus euphratica]
Swiss-Prot	Q9M8W9	Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g04130 PE=2 SV=2
TrEMBL	A0A4U5NM42	Pentatricopeptide repeat-containing protein OS=Populus alba OX=43335 GN=D5086_0000266630 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg5752, jg9557
Aizoaceae	Mesembryanthemum crystallinum	2	gene_3540, gene_5373
Amaranthaceae	Beta vulgaris	1	BVRB_6g151540
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae	Salicornia europaea	2	Seu_jg11218, Seu_jg15074
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00002583
Amaranthaceae	Suaeda glauca	4	Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ... gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ... CQ.Regalona.r1.7AG0010320
Anacardiaceae	Pistacia vera	2	pistato.v30228080, pistato.v30236350
Apiaceae	Apium graveolens	2	Ag1G01844, Ag5G02278
Arecaceae	Cocos nucifera	3	COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae	Phoenix dactylifera	2	gene-LOC103718091, gene-LOC103718684
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G22017, Ftri9G15803
Brassicaceae	Arabidopsis thaliana	2	AT3G04130.1, AT3G22670.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae	Brassica nigra	4	BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ... BniB07g032470.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1278
Casuarinaceae	Casuarina glauca	1	Cgl07G1351
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g04160
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae	Plantago ovata	2	Pov_00021764, Pov_00022238
Plumbaginaceae	Limonium bicolor	2	Lb1G00954, Lb1G08048
Poaceae	Echinochloa crus-galli	4	BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ... gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0510080.1.CDS1 ... HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_023481, gene-QYE76_061911
Poaceae	Oryza coarctata	3	Oco03G014520, Oco04G014970, Oco06G024280
Poaceae	Oryza sativa	1	LOC_Os02g38950.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G083600, gene-BS78_04G186700
Poaceae	Sporobolus alterniflorus	4	Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae	Thinopyrum elongatum	1	Tel6E01G415700
Poaceae	Triticum dicoccoides	4	gene_TRIDC5AG056230, gene_TRIDC5BG060280 ... gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae	Triticum aestivum	6	TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ... TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae	Zea mays	2	Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae	Zoysia japonica	1	nbis-gene-23463
Poaceae	Zoysia macrostachya	2	Zma_g13832, Zma_g494
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae	Kandelia obovata	1	Maker00006512
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae	Populus euphratica	5	populus_peu07647, populus_peu21418, populus_peu21419 ... populus_peu21420, populus_peu21689
Solanaceae	Lycium barbarum	2	gene-LOC132609668, gene-LOC132641233
Solanaceae	Solanum chilense	2	SOLCI004820900, SOLCI007024500
Solanaceae	Solanum pennellii	2	gene-LOC107020744, gene-LOC107031368
Tamaricaceae	Reaumuria soongarica	2	STRG.19726_chr07_+, gene_15533
Tamaricaceae	Tamarix chinensis	2	TC04G0518, TC09G0412
Zosteraceae	Zostera marina	3	Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1