Basic Information
Locus ID:
populus_peu07169
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 8592790 | 8598558 | - | populus_peu07169 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 43,766.25 Da | 35.39 | 88.73 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 360 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 49 | 360 | 5.81E-36 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 368 | 4.9E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 321 | 362 | 0.05 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 228 | 7.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 93 | 131 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 186 | 0.22 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 51 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_011023496.1 | PREDICTED: SEC12-like protein 2 isoform X2 [Populus euphratica] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A8T2Y6D9 | SEC12-like protein 2 OS=Populus deltoides OX=3696 GN=H0E87_015751 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology