Basic Information
Locus ID:
populus_peu07093
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 8026023 | 8037492 | - | populus_peu07093 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 140,162.02 Da | 53.56 | 74.31 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1125 | 1168 | 8.3776E-18 | - |
| CDD | cd12108 | Hr-like | 47 | 172 | 1.59328E-32 | - |
| CDD | cd12108 | Hr-like | 307 | 434 | 4.47467E-18 | - |
| CDD | cd12108 | Hr-like | 657 | 813 | 1.55702E-29 | - |
| Pfam | PF13639 | Ring finger domain | 1125 | 1167 | 3.9E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 997 | 1072 | 2.2E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 303 | 436 | 5.3E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1173 | 1230 | 7.4E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 653 | 814 | 3.3E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 49 | 174 | 2.5E-11 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1125 | 1174 | 1.27E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 992 | 1054 | 2.75E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1063 | 1118 | 5.62E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 43 | 191 | 3.2E-30 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1197 | 1238 | 4.7E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 650 | 879 | 8.7E-27 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 308 | 452 | 1.7E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1121 | 1170 | 1.4E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1126 | 1167 | 3.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1126 | 1168 | 11.205767 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 990 | 1059 | 25.401417 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1062 | 1125 | 29.316441 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_011022367.1 | PREDICTED: uncharacterized protein LOC105124168 isoform X1 [Populus euphratica] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1ZG19 | Zinc finger protein BRUTUS OS=Populus trichocarpa OX=3694 GN=POPTR_008G123300 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology