Basic Information
Locus ID:
populus_peu06904
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6665227 | 6666984 | + | populus_peu06904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.06 | 39,172.49 Da | 48.18 | 65.71 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 208 | 292 | 3.6E-19 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 309 | 340 | 2.0E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 208 | 293 | 9.7E-31 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 129 | - | - |
| Coils | Coil | Coil | 207 | 234 | - | - |
| Coils | Coil | Coil | 246 | 266 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_011020103.1 | PREDICTED: uncharacterized protein LOC105122587 [Populus euphratica] | 0 |
| TrEMBL | B9HIP5 | PAPA-1 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G106200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology