Basic Information
Locus ID:
populus_peu06847
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6245555 | 6280486 | + | populus_peu06847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 477,347.25 Da | 47.25 | 89.11 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2651 | 2758 | 1.23265E-4 | - |
| Pfam | PF00168 | C2 domain | 2650 | 2760 | 7.9E-5 | IPR000008 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 138 | 382 | 1.6E-70 | IPR031646 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3282 | 3560 | 5.4E-13 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 804 | 4.0E-36 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2258 | 2398 | 2.1E-9 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.1E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2009 | 2174 | 2.7E-9 | IPR009291 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2913 | 3025 | 2.0E-7 | IPR010482 |
| SUPERFAMILY | SSF50729 | PH domain-like | 846 | 944 | 3.06E-6 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2647 | 2759 | 2.31E-5 | IPR035892 |
| Gene3D | G3DSA:2.30.29.30 | - | 840 | 942 | 6.2E-6 | IPR011993 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2635 | 2779 | 1.4E-6 | IPR035892 |
| SMART | SM00694 | dysfc | 2992 | 3030 | 4.6E-4 | IPR006614 |
| SMART | SM00233 | PH_update | 833 | 944 | 0.001 | IPR001849 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2630 | 2778 | 9.406149 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2216 | 2239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4247 | 4264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4239 | 4264 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_011019234.1 | PREDICTED: uncharacterized protein LOC105122026 [Populus euphratica] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7FEY8 | C2 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G100600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology