Basic Information
Locus ID:
populus_peu06846
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6228305 | 6230674 | - | populus_peu06846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 49,500.01 Da | 47.86 | 71.53 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 221 | 412 | 3.4E-59 | IPR000743 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 122 | 202 | 3.1E-7 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 86 | 447 | 8.53E-111 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 79 | 451 | 7.9E-99 | IPR012334 |
| SMART | SM00710 | pbh1 | 226 | 252 | 500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 335 | 356 | 1500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 253 | 274 | 4400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 368 | 389 | 9800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 306 | 327 | 10.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 283 | 296 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 67 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_011019224.1 | PREDICTED: polygalacturonase At1g48100 [Populus euphratica] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5PZE5 | Polygalacturonase OS=Populus alba OX=43335 GN=D5086_0000157910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology