Basic Information
Locus ID:
populus_peu06631
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4703509 | 4712079 | - | populus_peu06631 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 69,048.52 Da | 55.57 | 62.94 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 139 | 189 | 8.84287E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 307 | 349 | 9.7E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 208 | 270 | 2.6E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 277 | 4.06E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 304 | 351 | 7.06E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 220 | 4.71E-18 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 578 | 605 | 5.89E-6 | IPR036443 |
| Gene3D | G3DSA:1.20.120.1750 | - | 266 | 535 | 3.2E-81 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 218 | 1.2E-17 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 300 | 358 | 0.11 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 208 | 270 | 9.5E-23 | IPR002867 |
| SMART | SM00547 | zf_4 | 580 | 604 | 0.0091 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 578 | 605 | 8.817719 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 135 | 362 | 50.272133 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 183 | 9.30263 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 582 | 601 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 575 | - | - |
| Coils | Coil | Coil | 370 | 390 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_034923684.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Populus alba] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8CJS5 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_029561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology