Basic Information
Locus ID:
populus_peu06234
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1894371 | 1898604 | - | populus_peu06234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 71,988.84 Da | 38.63 | 102.90 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 251 | 321 | 1.83421E-23 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 402 | 441 | 5.8E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 485 | 523 | 1.0E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 247 | 272 | 1.2E-6 | IPR003613 |
| Pfam | PF04564 | U-box domain | 298 | 345 | 1.7E-7 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 372 | 646 | 1.69E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 351 | 2.08E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 272 | 6.56E-8 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 120 | 1.7E-12 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 358 | 654 | 2.3E-55 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 245 | 348 | 7.5E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 250 | 341 | 4.7E-24 | IPR003613 |
| SMART | SM00185 | arm_5 | 525 | 565 | 13.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 566 | 606 | 330.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 443 | 483 | 0.047 | IPR000225 |
| SMART | SM00185 | arm_5 | 402 | 442 | 1.8E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 484 | 524 | 0.044 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 413 | 455 | 13.5624 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 246 | 348 | 32.412411 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 454 | 496 | 9.0824 | IPR000225 |
| Coils | Coil | Coil | 97 | 117 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_011031687.1 | PREDICTED: U-box domain-containing protein 14 [Populus euphratica] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Z6X0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_030936 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology