Basic Information
Locus ID:
populus_peu06023
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 561061 | 570632 | + | populus_peu06023 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 76,103.76 Da | 46.75 | 83.89 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 548 | 636 | 7.5E-17 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 286 | 538 | 1.6E-77 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 48 | 182 | 4.0E-24 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 3 | 214 | 1.55E-49 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 186 | 2.3E-42 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 346 | 463 | 3.2E-46 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 464 | 561 | 4.4E-29 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 185 | 23.337339 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 107 | 124 | - | IPR018200 |
| Coils | Coil | Coil | 198 | 226 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034909427.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Populus alba] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U5MCJ8 | ubiquitinyl hydrolase 1 OS=Populus alba OX=43335 GN=D5086_0000311330 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology