Basic Information
Locus ID:
populus_peu06012
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
calcium calmodulin-dependent serine threonine-protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 502833 | 507891 | + | populus_peu06012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 51,898.16 Da | 42.80 | 84.53 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 378 | 448 | 5.95075E-11 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 93 | 269 | 3.8E-38 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 384 | 448 | 5.3E-12 | IPR002048 |
| Pfam | PF13202 | EF hand | 342 | 357 | 0.035 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 90 | 279 | 5.74E-50 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 306 | 455 | 3.28E-26 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 85 | 296 | 5.6E-52 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 297 | 460 | 3.3E-28 | - |
| SMART | SM00054 | efh_1 | 380 | 408 | 1.2 | IPR002048 |
| SMART | SM00220 | serkin_6 | 46 | 269 | 7.4E-27 | IPR000719 |
| SMART | SM00054 | efh_1 | 337 | 365 | 1.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 422 | 450 | 6.6E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 333 | 368 | 9.352757 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 387 | 411 | 9.910664 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 269 | 28.711113 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 418 | 453 | 13.816021 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 431 | 443 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 136 | 148 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 389 | 401 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 346 | 358 | - | IPR018247 |
| PRINTS | PR00450 | Recoverin family signature | 438 | 458 | 8.9E-5 | - |
| PRINTS | PR00450 | Recoverin family signature | 341 | 362 | 8.9E-5 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12180.1 | calcium-dependent protein kinase 17. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_034929203.1 | calcium and calcium/calmodulin-dependent serine/threonine-protein kinase-like [Populus alba] | 0 |
| A0AAR7 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Lotus japonicus OX=34305 GN=CCAMK PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1YZT3 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Populus trichocarpa OX=3694 GN=POPTR_010G247400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168840 |
| Apiaceae | Apium graveolens | 1 | Ag3G02085 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G005670, COCNU_04G005700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709055 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G25598 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1578 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1608 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1013 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006959, Pov_00014745 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1968, BH05.2092, CH05.2164 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0368830, gene-QOZ80_5BG0416380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0069960.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013966 |
| Poaceae | Oryza coarctata | 2 | Oco09G012740, Oco10G012820 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g41090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G240800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504440, Pt_Chr0504501 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G012590, Chr22G005170 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G495900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG045650, gene_TRIDC1BG051680 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G307200.1, TraesCS1B02G318000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb200350_P004, Zm00001eb306730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25330 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28476 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1112 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6503 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21100 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.840 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017089 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11027, nbisL1-mrna-21129, nbisL1-mrna-21130 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13317 |
| Salicaceae | Populus euphratica | 2 | populus_peu06012, populus_peu19879 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645338 |
| Solanaceae | Solanum chilense | 1 | SOLCI001256100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028598 |