Basic Information
Locus ID:
populus_peu05939
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 50828 | 55178 | - | populus_peu05939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 59,943.75 Da | 47.20 | 97.47 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 220 | 512 | 5.20796E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 300 | 4.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 432 | 469 | 0.083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 512 | 6.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 342 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 254 | 4.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 216 | 512 | 3.92E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 513 | 2.2E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 424 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 513 | 1.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 4.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 470 | 0.97 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 255 | 3.4E-7 | IPR001680 |
| SMART | SM00668 | ctlh | 54 | 111 | 0.0011 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 512 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 223 | 256 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 54 | 111 | 9.502802 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 300 | 11.497408 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 223 | 256 | 9.889235 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 480 | 512 | 11.101955 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 309 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 7.729258 | IPR006594 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_011033097.1 | PREDICTED: WD repeat-containing protein 26-like [Populus euphratica] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | B9HK11 | WD repeat-containing protein 26 OS=Populus trichocarpa OX=3694 GN=POPTR_008G002700 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology