Basic Information
Locus ID:
populus_peu05933
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 17722 | 35253 | - | populus_peu05933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 90,792.50 Da | 33.22 | 80.08 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 137 | 391 | 8.92101E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 180 | 215 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 172 | 0.0094 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 299 | 1.2E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 341 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 257 | 1.4E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 746 | 825 | 1.8E-25 | IPR028021 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 31 | 124 | 5.0E-7 | IPR001245 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 138 | 423 | 2.99E-71 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 16 | 104 | 5.64E-10 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 262 | 479 | 1.2E-38 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 9 | 130 | 4.3E-10 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 131 | 261 | 2.0E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 3.7E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 173 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 341 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 382 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 215 | 2.3E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 309 | 344 | 12.288313 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 259 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 182 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 224 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 304 | 14.371031 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 183 | 217 | 11.471045 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 172 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 18.562237 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 350 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 266 | 14.986489 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 328 | 342 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 4.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 328 | 342 | 4.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 4.7E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 129 | 825 | 17.221714 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 682 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011033108.1 | PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Populus euphratica] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2Y9W3 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Populus deltoides OX=3696 GN=H0E87_016575 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology