Basic Information
Locus ID:
populus_peu05742
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 27782751 | 27792829 | + | populus_peu05742 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.36 | 119,299.76 Da | 37.65 | 81.54 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 870 | 904 | 3.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 409 | 442 | 1.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 292 | 521 | 9.89E-29 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 448 | 909 | 8.63E-43 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 932 | 1065 | 1.1E-5 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 724 | 1057 | 1.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 641 | 6.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 269 | 522 | 3.2E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 295 | 334 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 619 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 822 | 862 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 904 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 782 | 819 | 91.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 486 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 442 | 2.5E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 1 | 49 | 7.5E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 956 | 997 | 81.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 575 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 532 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 395 | 0.91 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 408 | 442 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 550 | 584 | 9.171722 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 1 | 49 | 12.010293 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 872 | 913 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 408 | 442 | 9.124694 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 872 | 904 | 10.15287 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1056 | 1088 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_011017797.1 | PREDICTED: topless-related protein 4-like isoform X1 [Populus euphratica] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K1X040 | Topless-related protein 4-like OS=Populus trichocarpa OX=3694 GN=POPTR_018G128000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology