Basic Information
Locus ID:
populus_peu05708
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 27444621 | 27451650 | - | populus_peu05708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 62,552.68 Da | 30.22 | 102.44 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 435 | 531 | 4.97094E-26 | - |
| CDD | cd00030 | C2 | 256 | 358 | 1.94969E-25 | - |
| Pfam | PF00168 | C2 domain | 254 | 358 | 2.4E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 64 | 240 | 7.8E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 433 | 532 | 4.4E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 430 | 552 | 1.05E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 252 | 383 | 1.1E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 419 | 551 | 2.4E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 247 | 382 | 9.0E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 434 | 532 | 2.8E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 255 | 355 | 8.0E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 416 | 533 | 20.669447 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 235 | 356 | 20.875397 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 59 | 241 | 28.137259 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 450 | 462 | 1.3E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 498 | 506 | 1.3E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 476 | 489 | 1.3E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_011017860.1 | PREDICTED: synaptotagmin-5-like [Populus euphratica] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5QJF6 | Synaptotagmin-5 OS=Populus alba OX=43335 GN=D5086_0000083790 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology