Basic Information
Locus ID:
populus_peu05515
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 25764575 | 25771335 | - | populus_peu05515 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 55,297.70 Da | 47.46 | 86.68 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 224 | 254 | 3.5E-7 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 207 | 1.5E-13 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 5.1E-8 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 278 | 2.6E-50 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 377 | 8.48E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 387 | 1.2E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 147 | 287 | 1.7E-24 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 146 | 1.2E-31 | IPR036770 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.7E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.067 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 1.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 5.7E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.036 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.83145 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.807884 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.630358 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.030149 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.089582 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.19691 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 11.46076 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 207 | 11.346704 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.568184 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.8347 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 1.7E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 1.7E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_011018117.1 | PREDICTED: probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Populus euphratica] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | B9IM57 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G098400 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology