Basic Information
Locus ID:
populus_peu05064
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 9900678 | 9908194 | + | populus_peu05064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 36,425.19 Da | 40.57 | 84.56 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 101 | 235 | 1.6E-54 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 38 | 92 | 9.2E-21 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 42 | 234 | 4.61E-36 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 235 | 291 | 6.93E-10 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 95 | 304 | 3.1E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 38 | 94 | 3.1E-16 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 40 | 94 | 11.065027 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 168 | 239 | 26.348137 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 180 | 188 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 210 | 239 | 7.4E-56 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 263 | 280 | 7.4E-56 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 130 | 159 | 7.4E-56 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 177 | 205 | 7.4E-56 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 92 | 121 | 7.4E-56 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 331 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_011009878.1 | PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like isoform X2 [Populus euphratica] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | U5FFW4 | DNA repair protein recA homolog 3, mitochondrial OS=Populus trichocarpa OX=3694 GN=POPTR_018G067900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology