Basic Information
Locus ID:
populus_peu05057
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 9523327 | 9530732 | - | populus_peu05057 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 45,278.07 Da | 39.70 | 85.82 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 53 | 378 | 6.57691E-165 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 57 | 320 | 5.1E-119 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 58 | 319 | 1.92E-56 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 320 | 376 | 9.94E-10 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 84 | 389 | 3.1E-112 | IPR027417 |
| SMART | SM00382 | AAA_5 | 107 | 280 | 1.7E-6 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 54 | 375 | 2.1E-137 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 85 | 244 | 39.819427 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 253 | 324 | 26.348137 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 265 | 273 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 177 | 206 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 348 | 365 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 143 | 172 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 215 | 244 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 295 | 324 | 2.9E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 262 | 290 | 2.9E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 54 | 380 | 43.505459 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 52 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_011009878.1 | PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like isoform X2 [Populus euphratica] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | U5FFW4 | DNA repair protein recA homolog 3, mitochondrial OS=Populus trichocarpa OX=3694 GN=POPTR_018G067900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology