Basic Information
Locus ID:
populus_peu04741
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1999393 | 2005064 | - | populus_peu04741 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 50,813.98 Da | 24.67 | 96.77 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 332 | 432 | 1.24553E-27 | - |
| CDD | cd00030 | C2 | 155 | 257 | 2.31289E-24 | - |
| Pfam | PF00168 | C2 domain | 330 | 432 | 4.1E-25 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 2 | 138 | 3.1E-8 | IPR039010 |
| Pfam | PF00168 | C2 domain | 153 | 257 | 1.9E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 325 | 449 | 8.93E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 151 | 283 | 1.3E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 317 | 449 | 1.8E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 149 | 288 | 6.3E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 331 | 429 | 2.3E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 154 | 254 | 2.2E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 134 | 255 | 19.39114 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 311 | 430 | 20.910904 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 1 | 140 | 21.197752 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 373 | 386 | 1.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 395 | 403 | 1.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 347 | 359 | 1.5E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_011036591.1 | PREDICTED: synaptotagmin-4 [Populus euphratica] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3N7I329 | C2 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G025000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology