Basic Information
Locus ID:
populus_peu04731
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Topless-related protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1924146 | 1931514 | + | populus_peu04731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 120,760.12 Da | 37.71 | 84.26 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 486 | 523 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 479 | 8.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 342 | 656 | 1.22E-42 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 539 | 1015 | 1.33E-36 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 536 | 685 | 1.1E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 312 | 535 | 8.6E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 724 | 1065 | 4.9E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 964 | 1005 | 2.5 | IPR001680 |
| SMART | SM00667 | Lish | 5 | 37 | 5.1E-7 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1014 | 1057 | 140.0 | IPR001680 |
| SMART | SM00668 | ctlh | 35 | 93 | 9.0E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 573 | 613 | 0.73 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 434 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 791 | 827 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 527 | 570 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 440 | 480 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 830 | 870 | 0.77 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 912 | 0.002 | IPR001680 |
| SMART | SM00320 | WD40_4 | 483 | 524 | 0.0059 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 581 | 622 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 447 | 489 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 36 | 93 | 13.046344 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 880 | 921 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 447 | 484 | 8.913786 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 5 | 37 | 11.102631 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 880 | 912 | 9.704691 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 467 | 481 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1074 | 1088 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1063 | 1095 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_011036611.1 | PREDICTED: topless-related protein 1-like [Populus euphratica] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A4U5QK96 | WD-40 repeat family protein OS=Populus alba OX=43335 GN=D5086_0000077100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology