Basic Information
Locus ID:
populus_peu04730
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1906335 | 1914386 | - | populus_peu04730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 121,034.74 Da | 41.68 | 87.36 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 432 | 468 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 511 | 0.054 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 880 | 916 | 1.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 319 | 921 | 1.33E-42 | IPR011047 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 589 | 1064 | 1.96E-26 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 524 | 656 | 8.8E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 783 | 1072 | 2.3E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 211 | 523 | 1.4E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 515 | 557 | 92.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 468 | 0.0023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 512 | 0.066 | IPR001680 |
| SMART | SM00320 | WD40_4 | 834 | 874 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 603 | 644 | 75.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 381 | 421 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1028 | 1062 | 460.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 564 | 600 | 130.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 791 | 831 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 360 | 35.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.7E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 877 | 916 | 8.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 969 | 1010 | 2.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 884 | 918 | 11.73468 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.152599 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 434 | 477 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 884 | 918 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.657039 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 903 | 917 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_011036612.1 | PREDICTED: protein TOPLESS-like isoform X1 [Populus euphratica] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8T2WN86 | Topless-related protein 1-like OS=Populus deltoides OX=3696 GN=H0E87_030034 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology