Basic Information
Locus ID:
populus_peu04697
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1585307 | 1594691 | - | populus_peu04697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 106,310.35 Da | 52.15 | 58.80 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 716 | 762 | 0.00211462 | IPR002999 |
| SUPERFAMILY | SSF48371 | ARM repeat | 68 | 246 | 4.22E-7 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 713 | 757 | 2.33E-7 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 712 | 764 | 1.7E-11 | - |
| SMART | SM00333 | TUDOR_7 | 711 | 769 | 2.9E-4 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 623 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 940 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 828 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_011036666.1 | PREDICTED: nucleolar and coiled-body phosphoprotein 1 isoform X1 [Populus euphratica] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1WUI4 | Tudor domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G020400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology