Basic Information
Locus ID:
populus_peu04681
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1402548 | 1406347 | + | populus_peu04681 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 9,031.39 Da | 15.23 | 62.12 | -0.62 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development. | 0 |
| RefSeq | XP_011036689.1 | PREDICTED: BTB/POZ domain-containing protein NPY1-like [Populus euphratica] | 0 |
| Q8H1D3 | Phototropic-responsive NPH3 family protein NPY1 OS=Arabidopsis thaliana OX=3702 GN=NPY1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314ZVP8 | BTB/POZ domain-containing protein NPY1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_08703 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag6G02427 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11944 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G868800 |
| Poaceae | Triticum aestivum | 1 | TraesCS7D02G264400.1.cds1 |
| Poaceae | Zea mays | 3 | Zm00001eb305650_P001, Zm00001eb310110_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20334 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1179, evm.TU.LG16.1056 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g03430, gene.Posoc02g28470, gene.Posoc05g05550 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.548 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5859 |
| Salicaceae | Populus euphratica | 2 | populus_peu04681, populus_peu37962 |