Basic Information
Locus ID:
populus_peu04620
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 881030 | 888891 | - | populus_peu04620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 62,044.21 Da | 48.42 | 78.14 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 180 | 485 | 2.43778E-167 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 181 | 484 | 3.8E-45 | IPR001394 |
| Pfam | PF01753 | MYND finger | 73 | 110 | 3.7E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 70 | 114 | 1.73E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 177 | 495 | 2.75E-87 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 175 | 493 | 2.5E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 59 | 116 | 5.0E-15 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 73 | 110 | 12.39774 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 181 | 487 | 50.245796 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 182 | 197 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 73 | 110 | - | IPR002893 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_011044972.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 18-like [Populus euphratica] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7XZL6 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_055657 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology