Basic Information
Locus ID:
populus_peu04551
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 323287 | 326203 | + | populus_peu04551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 30,988.91 Da | 28.39 | 66.38 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 115 | 189 | 1.06094E-39 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 22 | 66 | 4.0E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 117 | 182 | 8.6E-15 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 108 | 199 | 3.9E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 21 | 91 | 5.29E-17 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 7 | 87 | 1.2E-16 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 92 | 193 | 2.8E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 1 | 68 | 0.0029 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 116 | 185 | 3.8E-19 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 22 | 72 | 11.554067 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 115 | 189 | 16.210192 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_011002969.1 | PREDICTED: oligouridylate-binding protein 1-like isoform X2 [Populus euphratica] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | B9NA29 | Oligouridylate-binding protein 1-like OS=Populus trichocarpa OX=3694 GN=POPTR_018G002300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology