Basic Information
Locus ID:
populus_peu04532
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 205275 | 210134 | + | populus_peu04532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 45,657.32 Da | 35.22 | 69.50 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 251 | 325 | 2.36679E-38 | - |
| CDD | cd12619 | RRM2_PUB1 | 131 | 205 | 1.15594E-48 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 47 | 113 | 4.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 253 | 318 | 1.6E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 132 | 202 | 7.8E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 124 | 228 | 2.01E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 244 | 335 | 8.06E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 6 | 125 | 1.75E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 125 | 223 | 3.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 228 | 329 | 5.9E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 36 | 124 | 6.3E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 252 | 321 | 3.8E-19 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 46 | 115 | 3.4E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 131 | 204 | 6.0E-4 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 131 | 204 | 4.3E-22 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 252 | 321 | 5.3 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 251 | 325 | 16.210192 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 45 | 119 | 14.845758 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 130 | 208 | 16.773018 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011002969.1 | PREDICTED: oligouridylate-binding protein 1-like isoform X2 [Populus euphratica] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5Q576 | Oligouridylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_0000137910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology