Basic Information
Locus ID:
populus_peu04482
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 66433311 | 66435719 | - | populus_peu04482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 88,386.25 Da | 35.93 | 106.72 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 537 | 558 | 0.99 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 69 | 3.4E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 107 | 167 | 5.2E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 251 | 311 | 2.9E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 669 | 709 | 2.2E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 375 | 714 | 4.87E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 21 | 312 | 6.8E-51 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 464 | 751 | 6.9E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 222 | 317 | 4.2E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 318 | 463 | 1.9E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 221 | 1.1E-38 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 510 | 533 | 100.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 226 | 245 | 330.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 558 | 584 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 672 | 701 | 19.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 250 | 276 | 42.0 | - |
| SMART | SM00369 | LRR_typ_2 | 105 | 129 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 558 | 582 | 8.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 178 | 202 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 226 | 250 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 274 | 298 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 672 | 695 | 6.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 534 | 557 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 130 | 154 | 68.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 510 | 533 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 696 | 719 | 100.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 674 | 697 | 7.788962 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 536 | 559 | 7.165205 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 675 | 688 | 4.2E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 696 | 709 | 4.2E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_011048170.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Populus euphratica] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2BQ81 | LRRNT_2 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G003200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |