Basic Information
Locus ID:
populus_peu04412
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 66031733 | 66038149 | + | populus_peu04412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 109,389.49 Da | 46.92 | 69.99 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 512 | 568 | 1.37929E-25 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 577 | 929 | 1.7E-31 | IPR001525 |
| Pfam | PF01426 | BAH domain | 251 | 356 | 1.7E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 512 | 567 | 4.9E-10 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 399 | 929 | 5.32E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 501 | 574 | 8.43E-13 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 731 | 895 | 2.1E-218 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 382 | 489 | 1.5E-14 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 174 | 341 | 1.3E-44 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 512 | 946 | 2.1E-218 | - |
| SMART | SM00298 | chromo_7 | 511 | 571 | 4.1E-7 | IPR000953 |
| SMART | SM00439 | BAH_4 | 238 | 356 | 3.8E-15 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 238 | 356 | 17.084938 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 397 | 936 | 44.731712 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 512 | 566 | 11.743001 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 583 | 595 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 398 | 414 | 1.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 626 | 640 | 1.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 672 | 685 | 1.7E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 178 | - | - |
| Coils | Coil | Coil | 107 | 127 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_011037978.1 | PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 isoform X1 [Populus euphratica] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K2BQI6 | DNA (cytosine-5-)-methyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_001G009600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology