Basic Information
Locus ID:
populus_peu04394
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 65844612 | 65845997 | - | populus_peu04394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 20,031.81 Da | 29.11 | 70.27 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 114 | 156 | 4.35723E-20 | - |
| Pfam | PF04564 | U-box domain | 110 | 181 | 8.4E-13 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 179 | 4.0E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 183 | 1.0E-21 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 113 | 177 | 4.4E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 109 | 183 | 30.616734 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68940.3 | Armadillo/beta-catenin-like repeat family protein. | 0 |
| RefSeq | XP_011037930.1 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 isoform X2 [Populus euphratica] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T3A023 | U-box domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_003548 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0091s00022.v1.0 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0352790.1, HORVU.MOREX.r3.6HG0592860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015740 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g13780.1 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG069030 |
| Poaceae | Triticum aestivum | 1 | TraesCS6B02G370800.1 |
| Salicaceae | Populus euphratica | 1 | populus_peu04394 |