Basic Information
Locus ID:
populus_peu04330
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin ligase BIG BROTHER-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 65261522 | 65266343 | - | populus_peu04330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 28,826.51 Da | 58.47 | 58.55 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 196 | 237 | 8.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 242 | 3.53E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 242 | 5.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 237 | 6.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 237 | 10.497623 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 113 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63530.1 | RING/U-box superfamily protein. Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation. | 0 |
| RefSeq | XP_011037811.1 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-like isoform X1 [Populus euphratica] | 0 |
| Q8L649 | E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2BR22 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G019600 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology