Basic Information
Locus ID:
populus_peu04262
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 64801304 | 64802521 | - | populus_peu04262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 24,269.34 Da | 43.82 | 68.78 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 1 | 30 | 3.94728E-10 | - |
| Pfam | PF03145 | Seven in absentia protein family | 52 | 196 | 8.3E-52 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 196 | 5.89E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 70 | 200 | 3.0E-36 | IPR008974 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_011000547.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Populus euphratica] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AJ41 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_003766 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology