Basic Information
Locus ID:
populus_peu04230
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 64566997 | 64575378 | + | populus_peu04230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 132,231.81 Da | 36.44 | 85.73 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 944 | 1065 | 1.2E-19 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 691 | 809 | 3.2E-12 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 621 | 685 | 2.0E-8 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 470 | 515 | 9.8E-6 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 817 | 938 | 6.2E-18 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 521 | 587 | 2.5E-15 | IPR040847 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 189 | 261 | 2.9E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 76 | 176 | 2.7E-12 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 308 | 393 | 7.8E-15 | IPR020683 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1074 | 1192 | 1.0E-15 | IPR040847 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 96 | 408 | 5.79E-44 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 184 | 327 | 5.0E-22 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 328 | 460 | 8.5E-28 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 69 | 183 | 1.1E-23 | IPR036770 |
| SMART | SM00248 | ANK_2a | 216 | 247 | 37.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 148 | 177 | 0.01 | IPR002110 |
| SMART | SM00248 | ANK_2a | 329 | 358 | 6.8E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 114 | 144 | 8.6E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 395 | 430 | 1400.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 289 | 324 | 3200.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 362 | 391 | 0.0024 | IPR002110 |
| SMART | SM00248 | ANK_2a | 71 | 100 | 570.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 183 | 212 | 0.013 | IPR002110 |
| SMART | SM00248 | ANK_2a | 251 | 282 | 2000.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 183 | 215 | 8.97673 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 114 | 147 | 11.06011 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 114 | 136 | 9.967073 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 362 | 394 | 10.895672 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 329 | 361 | 14.47899 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 362 | 394 | 12.26206 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 148 | 175 | 9.595634 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 329 | 360 | 13.495747 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 148 | 180 | 10.28552 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 115 | 130 | 3.6E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 345 | 359 | 3.6E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13530.1 | protein kinases;ubiquitin-protein ligases. Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling. KEG is essential for Arabidopsis growth and development. ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. | 0 |
| RefSeq | XP_011000600.1 | PREDICTED: E3 ubiquitin-protein ligase KEG isoform X1 [Populus euphratica] | 0 |
| Q9FY48 | E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana OX=3702 GN=KEG PE=1 SV=2 | 0 | |
| TrEMBL | A0A6M2EBL6 | RING-type E3 ubiquitin transferase OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26620, jg29897 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24422 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032315 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30023, Sbi_jg43462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18441 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004204 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66219, Sgl70535 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014968, gene:ENSEOMG00000019608 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0004540, CQ.Regalona.r1.2BG0005360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165730 |
| Apiaceae | Apium graveolens | 2 | Ag6G02939, Ag8G01163 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G017600, COCNU_16G001660 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702563, gene-LOC103716443 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1826.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11643 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012422m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g006380.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0902, Ceq05G1607 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0914, Cgl05G1603 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10300 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g01830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3156, nbisL1-mrna-7282 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2014, evm.TU.LG09.736 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039394 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02391, Lb7G35419 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.2599, CH05.2772 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0374510, gene-QOZ80_5BG0421810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0064500.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_013688, gene-QYE76_071995 |
| Poaceae | Oryza coarctata | 2 | Oco09G008750, Oco10G008900 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G132900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505121 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G021240, Chr12G016680, Chr12G016690, Chr18G008360 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G405300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG036850, gene_TRIDC1BG041860 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G245000.3, TraesCS1B02G256200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287260_P002, Zm00001eb350870_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12097, nbis-gene-14541, nbis-gene-14542 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28181 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1021, evm.TU.LG25.319 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g21000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.72 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1047 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14067, nbisL1-mrna-14068 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.289 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019135 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14989 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21475 |
| Salicaceae | Populus euphratica | 3 | populus_peu01794, populus_peu04229, populus_peu04230 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645371 |
| Solanaceae | Solanum chilense | 1 | SOLCI006813100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002366 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13741_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3920 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27350.v3.1 |