Basic Information
Locus ID:
populus_peu04151
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 63977910 | 63982902 | - | populus_peu04151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.47 | 39,930.10 Da | 46.54 | 79.44 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.60075E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.9E-15 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 250 | 305 | 6.7E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 147 | 185 | 4.1E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 331 | 366 | 1.5E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 144 | 195 | 1.1E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 249 | 313 | 1.12E-21 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 84 | 2.76E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 310 | 372 | 4.18E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 140 | 190 | 8.2E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.7E-25 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 243 | 305 | 4.5E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 322 | 372 | 2.1E-24 | - |
| SMART | SM00165 | uba_6 | 331 | 368 | 2.0E-9 | IPR015940 |
| SMART | SM00727 | CBM | 248 | 291 | 1.5E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.5E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 147 | 187 | 0.0095 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 374 | 1.2E-128 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 145 | 188 | 11.703495 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 329 | 369 | 16.233749 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.953026 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 357 | 372 | 4.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 342 | 356 | 4.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 276 | 298 | 4.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 325 | 341 | 4.8E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 107 | - | - |
| Coils | Coil | Coil | 277 | 297 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_011034604.1 | PREDICTED: ubiquitin receptor RAD23b-like [Populus euphratica] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A8T2ZYZ9 | Ubiquitin receptor RAD23 OS=Populus deltoides OX=3696 GN=H0E87_003343 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology