Basic Information
Locus ID:
populus_peu04093
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Sister chromatid cohesion protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 63546518 | 63557353 | + | populus_peu04093 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 95,279.02 Da | 48.33 | 71.34 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 40 | 235 | 1.24E-8 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 616 | 659 | 5.04E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 613 | 665 | 4.7E-11 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 12 | 235 | 1.2E-5 | IPR011989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 710 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 865 | - | - |
| Coils | Coil | Coil | 26 | 46 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_011034537.1 | PREDICTED: uncharacterized protein LOC105132632 isoform X3 [Populus euphratica] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A4U5PKX1 | Tudor domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000213810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology