Basic Information
Locus ID:
populus_peu04092
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Ccr4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 63538068 | 63540585 | + | populus_peu04092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 29,875.71 Da | 27.62 | 94.08 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 161 | 243 | 6.8E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 136 | 5.4E-14 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 255 | 6.7E-93 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 3 | 259 | 1.0E-99 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_011034532.1 | PREDICTED: probable CCR4-associated factor 1 homolog 6 [Populus euphratica] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2BSD8 | poly(A)-specific ribonuclease OS=Populus trichocarpa OX=3694 GN=POPTR_001G046700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology