Basic Information
Locus ID:
populus_peu04067
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 63313927 | 63323153 | + | populus_peu04067 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 84,004.95 Da | 42.66 | 69.06 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 488 | 773 | 3.31904E-65 | - |
| Pfam | PF08513 | LisH | 10 | 36 | 2.2E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 740 | 773 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 656 | 690 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 535 | 566 | 6.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 573 | 610 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 524 | 6.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 485 | 773 | 4.58E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 621 | 773 | 1.1E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 447 | 620 | 1.0E-34 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0031 | IPR006594 |
| SMART | SM00320 | WD40_4 | 527 | 566 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 570 | 610 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 734 | 773 | 0.004 | IPR001680 |
| SMART | SM00320 | WD40_4 | 693 | 732 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 524 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 649 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 690 | 2.6E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 492 | 527 | 8.781968 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 741 | 773 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 577 | 619 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.273682 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 741 | 773 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 659 | 699 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 534 | 566 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 492 | 533 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 534 | 566 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 577 | 612 | 8.834696 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 511 | 525 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 511 | 525 | 7.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 760 | 773 | 7.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 553 | 567 | 7.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 397 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_002299273.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Populus trichocarpa] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2ZYJ9 | LisH domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_003268 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology