Basic Information
Locus ID:
populus_peu03990
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62716846 | 62718333 | - | populus_peu03990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 43,246.44 Da | 41.86 | 72.23 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 332 | 371 | 4.7E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 326 | 376 | 4.53E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 126 | 246 | 2.09E-13 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 321 | 375 | 9.8E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 111 | 257 | 1.4E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 329 | 371 | 11.127352 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 403 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_011036087.1 | PREDICTED: F-box protein At1g67340-like [Populus euphratica] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5NAH1 | Zinc finger family protein OS=Populus alba OX=43335 GN=D5086_0000269360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology