Basic Information
Locus ID:
populus_peu03893
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 61712319 | 61716926 | - | populus_peu03893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 114,587.95 Da | 49.22 | 102.29 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16452 | SP-RING_like | 261 | 302 | 2.35488E-13 | - |
| Pfam | PF04564 | U-box domain | 259 | 324 | 1.0E-12 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 325 | 5.18E-22 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 340 | 606 | 2.21E-24 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 451 | 1007 | 1.5E-23 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 17 | 132 | 1.1E-7 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 332 | 618 | 5.9E-23 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 327 | 7.6E-24 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 855 | 1024 | 5.6E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 626 | 854 | 2.1E-14 | IPR011989 |
| SMART | SM00185 | arm_5 | 896 | 936 | 6.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 440 | 481 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 802 | 842 | 270.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 5.0E-17 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 452 | 482 | 10.587399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 17.657784 | IPR003613 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 263 | 301 | 9.273124 | IPR001841 |
| Coils | Coil | Coil | 71 | 91 | - | - |
| Coils | Coil | Coil | 43 | 63 | - | - |
| Coils | Coil | Coil | 192 | 229 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21350.1 | plant U-box 8. Encodes a U-box/ARM repeat protein required fore self-incompatibility. | 0 |
| RefSeq | XP_011036215.1 | PREDICTED: U-box domain-containing protein 43-like [Populus euphratica] | 0 |
| O81902 | U-box domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=PUB8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6M2EA01 | RING-type E3 ubiquitin transferase OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30167590 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G006120 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712369 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0960 |
| Salicaceae | Populus euphratica | 2 | populus_peu03893, populus_peu34722 |