Basic Information
Locus ID:
populus_peu03482
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 58085040 | 58097372 | - | populus_peu03482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 31,034.79 Da | 39.47 | 81.49 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 97 | 165 | 5.09617E-46 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 104 | 151 | 7.5E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 179 | 249 | 9.0E-22 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 97 | 166 | 1.83E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 107 | 186 | 3.1E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 95 | 154 | 2.9E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 181 | 269 | 12.253377 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 95 | 155 | 31.973269 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 97 | 151 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 132 | 153 | 5.5E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 117 | 132 | 5.5E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 97 | 117 | 5.5E-31 | IPR002100 |
| Coils | Coil | Coil | 215 | 242 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.2 | - | 0 |
| RefSeq | XP_024461746.2 | agamous-like MADS-box protein AGL19 isoform X1 [Populus trichocarpa] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7E921 | MADS-box transcription factor OS=Populus trichocarpa OX=3694 GN=POPTR_001G112400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology