Basic Information
Locus ID:
populus_peu03372
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DUF1087
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 57053500 | 57068546 | + | populus_peu03372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 246,858.17 Da | 54.33 | 74.42 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 75 | 116 | 2.7111E-21 | - |
| CDD | cd11660 | SANT_TRF | 1695 | 1739 | 2.27534E-8 | - |
| CDD | cd18793 | SF2_C_SNF | 935 | 1075 | 2.25474E-33 | - |
| CDD | cd18659 | CD2_tandem | 644 | 695 | 7.6032E-17 | - |
| CDD | cd18660 | CD1_tandem | 588 | 640 | 1.2306E-14 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 780 | 992 | 3.3E-39 | IPR000330 |
| Pfam | PF06465 | Domain of Unknown Function (DUF1087) | 1245 | 1286 | 2.9E-7 | IPR009463 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1003 | 1064 | 2.4E-10 | IPR001650 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 644 | 695 | 7.4E-12 | IPR023780 |
| Pfam | PF00628 | PHD-finger | 75 | 118 | 2.0E-9 | IPR019787 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 604 | 646 | 4.76E-10 | IPR016197 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 71 | 123 | 2.88E-15 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 835 | 1103 | 2.84E-39 | IPR027417 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 644 | 692 | 5.31E-9 | IPR016197 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 702 | 926 | 6.38E-43 | IPR027417 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 1693 | 1740 | 6.1E-7 | IPR009057 |
| Gene3D | G3DSA:2.40.50.40 | - | 552 | 644 | 1.9E-11 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 999 | 1157 | 9.0E-50 | IPR027417 |
| Gene3D | G3DSA:1.10.10.60 | - | 1693 | 1742 | 1.8E-6 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 771 | 935 | 2.9E-67 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 704 | 770 | 4.0E-15 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 126 | 3.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 936 | 993 | 2.9E-67 | IPR027417 |
| Gene3D | G3DSA:2.40.50.40 | - | 645 | 695 | 1.0E-9 | - |
| SMART | SM00487 | ultradead3 | 733 | 902 | 1.8E-18 | IPR014001 |
| SMART | SM00490 | helicmild6 | 988 | 1064 | 8.0E-14 | IPR001650 |
| SMART | SM00298 | chromo_7 | 646 | 697 | 0.016 | IPR000953 |
| SMART | SM00298 | chromo_7 | 396 | 645 | 1.6E-9 | IPR000953 |
| SMART | SM01147 | DUF1087_2 | 1231 | 1292 | 2.3E-18 | IPR009463 |
| SMART | SM00249 | PHD_3 | 74 | 117 | 7.9E-13 | IPR001965 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 1687 | 1743 | 6.086305 | IPR001005 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 927 | 1112 | 12.580359 | IPR001650 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 643 | 708 | 10.3493 | IPR000953 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 749 | 891 | 18.51923 | IPR014001 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 592 | 644 | 10.602701 | IPR000953 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 72 | 119 | 10.0418 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 75 | 116 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1214 | 1246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2156 | 2202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1288 | 1319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2123 | 2144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 239 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44800.1 | chromatin remodeling 4. | 0 |
| RefSeq | XP_011018308.1 | PREDICTED: protein CHROMATIN REMODELING 4-like isoform X2 [Populus euphratica] | 0 |
| F4KBP5 | Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana OX=3702 GN=CHR4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2BWI4 | Protein CHROMATIN REMODELING 4 OS=Populus trichocarpa OX=3694 GN=POPTR_001G123400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20920 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6170, gene_6171 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030129 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16043, Sbi_jg56949 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24706 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013711 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl71828, Sgl71829, Sgl75394 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007979, gene:ENSEOMG00000036380 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016160, CQ.Regalona.r1.7BG0020010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30079060 |
| Apiaceae | Apium graveolens | 3 | Ag6G01210, Ag6G01213, Ag7G01102 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012720, scaffold000767G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711432, gene-LOC103713520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1054.V1.1, AsparagusV1_03.1055.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28642 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G44800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000738m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g09650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g016800.2N, BniB08g006390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1410 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1572 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g03500, gene.Cymno13g03520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0280s00012.v1.0, Dusal.0357s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-3062, nbisL1-mrna-3063, nbisL1-mrna-3064 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.376 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012913 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24837, Lb4G24843, Lb4G24844 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.3062, BH03.3235, BH03.3237, CH03.3433, Contig2801.2 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0143700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041223 |
| Poaceae | Oryza coarctata | 2 | Oco13G007840, Oco14G008360 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G284100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304117 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G006020, Chr24G007750, Chr27G011240, Chr28G007090 |
| Poaceae | Zea mays | 1 | Zm00001eb105480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6469 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.235, evm.TU.LG04.517 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1011 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10871 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9244, nbisL1-mrna-9245 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.276 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004176 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7694 |
| Salicaceae | Populus euphratica | 3 | populus_peu03372, populus_peu34221, populus_peu34222 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621471 |
| Solanaceae | Solanum chilense | 1 | SOLCI005700300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011005 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5089_chr03_-, gene_16585 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2009 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20100.v3.1 |