Basic Information
Locus ID:
populus_peu03097
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 54380746 | 54421149 | - | populus_peu03097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 491,595.22 Da | 43.59 | 88.62 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 108 | 1.7E-29 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3354 | 3520 | 8.5E-12 | IPR009543 |
| Pfam | PF00169 | PH domain | 829 | 937 | 1.4E-5 | IPR001849 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 399 | 2.8E-64 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4258 | 4331 | 6.6E-6 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2246 | 2392 | 4.5E-8 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2014 | 2176 | 2.7E-9 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 587 | 807 | 2.2E-31 | IPR031642 |
| SUPERFAMILY | SSF50729 | PH domain-like | 822 | 940 | 5.55E-10 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 825 | 943 | 2.4E-6 | IPR011993 |
| SMART | SM00233 | PH_update | 827 | 940 | 7.1E-8 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 826 | 938 | 9.8057 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1860 | 1879 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_011018665.1 | PREDICTED: uncharacterized protein LOC105121634 [Populus euphratica] | 0 |
| Q54LN2 | Intermembrane lipid transfer protein vps13D OS=Dictyostelium discoideum OX=44689 GN=vps13D PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2BXU3 | PH domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G148800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology