Basic Information
Locus ID:
populus_peu02964
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 53016648 | 53018481 | - | populus_peu02964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 31,635.74 Da | 67.66 | 89.89 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 107 | 150 | 8.07204E-18 | - |
| Pfam | PF13639 | Ring finger domain | 107 | 150 | 3.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 156 | 4.8E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 154 | 1.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 108 | 149 | 1.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 108 | 150 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 230 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006369074.1 | RING-H2 finger protein ATL3 [Populus trichocarpa] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2ZVA5 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_002331 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology