Basic Information
Locus ID:
populus_peu02952
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 52911754 | 52912585 | - | populus_peu02952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 23,597.14 Da | 56.60 | 79.55 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 44 | 87 | 1.01262E-17 | - |
| Pfam | PF13639 | Ring finger domain | 44 | 87 | 2.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 93 | 5.3E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 91 | 6.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 45 | 86 | 1.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 45 | 87 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 167 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011048637.1 | PREDICTED: RING-H2 finger protein ATL3 [Populus euphratica] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | B9MUK5 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_001G162000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology