Basic Information
Locus ID:
populus_peu02912
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Oligouridylate-binding protein 1B-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 52484801 | 52489497 | + | populus_peu02912 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 39,889.27 Da | 47.46 | 69.20 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 255 | 329 | 4.79398E-36 | - |
| CDD | cd12352 | RRM1_TIA1_like | 51 | 121 | 9.28078E-37 | - |
| CDD | cd12619 | RRM2_PUB1 | 135 | 209 | 6.18141E-53 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 51 | 117 | 2.9E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 136 | 206 | 4.0E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 257 | 322 | 3.2E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 33 | 127 | 2.69E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 129 | 215 | 7.12E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 247 | 337 | 1.61E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 232 | 334 | 3.8E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 131 | 5.6E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 132 | 227 | 4.7E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 256 | 325 | 9.9E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 135 | 208 | 3.5E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 50 | 119 | 2.1E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 255 | 329 | 14.896925 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 49 | 123 | 14.999257 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 134 | 212 | 17.25057 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 349 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011048579.1 | PREDICTED: oligouridylate-binding protein 1B-like isoform X1 [Populus euphratica] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5P7T9 | Oligouridylate-binding family protein OS=Populus alba OX=43335 GN=D5086_0000218910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology