Basic Information
Locus ID:
populus_peu02609
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 44821536 | 44823284 | - | populus_peu02609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 42,993.64 Da | 47.42 | 90.79 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 249 | 350 | 1.08642E-25 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 314 | 341 | 3.9E-6 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 70 | 210 | 9.1E-35 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 36 | 208 | 1.98E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 178 | 375 | 5.69E-21 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 12 | 232 | 1.1E-47 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 313 | 378 | 3.1E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 241 | 300 | 5.3E-8 | IPR027417 |
| SMART | SM00487 | ultradead3 | 48 | 252 | 4.8E-33 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 198 | 380 | 12.062502 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 206 | 22.002451 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 183 | 191 | - | IPR000629 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_034903900.1 | eukaryotic initiation factor 4A-8-like [Populus alba] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4V6A1G5 | Eukaryotic initiation factor 4A-11 OS=Populus alba OX=43335 GN=D5086_0000284390 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology