Basic Information
Locus ID:
populus_peu02478
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 41589740 | 41601753 | + | populus_peu02478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 99,259.75 Da | 43.11 | 78.81 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 717 | 880 | 3.27964E-60 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 287 | 879 | 6.3E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 285 | 882 | 1.02E-107 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 699 | 882 | 4.6E-55 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 276 | 501 | 3.4E-67 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 287 | 882 | 56.797668 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 288 | 303 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 825 | 842 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_011044610.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Populus euphratica] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2K2C1H4 | Ubiquitin carboxyl-terminal hydrolase OS=Populus trichocarpa OX=3694 GN=POPTR_001G214800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology