Basic Information
Locus ID:
populus_peu02352
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 38409940 | 38416169 | + | populus_peu02352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 61,117.07 Da | 57.14 | 81.04 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 339 | 540 | 9.92115E-96 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 337 | 443 | 1.7E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 13 | 109 | 1.1E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 339 | 466 | 6.67E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 333 | 540 | 6.2E-68 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 122 | 3.5E-27 | - |
| SMART | SM00232 | pad1_6 | 339 | 475 | 4.3E-18 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 340 | 470 | 30.306158 | IPR037518 |
| Coils | Coil | Coil | 88 | 115 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_011008312.1 | PREDICTED: AMSH-like ubiquitin thioesterase 1 [Populus euphratica] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7Y9V3 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_049220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology